Mass Spectrometry Database Committee


JCAMP Files

JCAMP files are ASCII (text) files which essentially list compound name, molecular weight and other header information, plus the mass:abundance pairs which make up the mass spectrum, in a 'standard'* format. Currently, the Agilent (HP) ChemStation systems list JCAMP version 4.10.This is the simplest format into which library entries can be broken down. JCAMP files can be edited with a text editor, but you have to be really, really, really, careful, otherwise you will end up corrupting the entire file (i.e. you won't be able to convert it back to a useable library). Macros within the ChemStation software can convert JCAMP files to binary library files, and vice versa. More will be said about editing JCAMP files in the future. Meanwhile, a partial JCAMP file entry is shown below.

##TITLE=Library Entry 1 in D:\AAFS9912.XXX

##JCAMPDX=Revision 4.10
##DATA TYPE=MASS SPECTRUM
##SAMPLE DESCRIPTION=
##NAMES=
##CAS NAME=YOHIMBINE
##MOLFORM=C21H26N2O3
##CAS REGISTRY NO=000146-48-5
##MP=-3.00000e+02
##BP=-3.00000e+02
##MW=354.194343
##$RETENTION INDEX=0.00000e+00
##$CONDENSED SPECTRUM=NO
##NPOINTS= 123
##XYDATA=(XY..XY)
42 279
43 212
44 95
53 133
54 79
55 223
57 102
59 168
65 83
67 170
68 105
69 99
71 57
77 232
Etc. Etc.

 

*(The term "standard" is used loosely, since the HP JCAMP format does not comply to the generally accepted JCAMP-DX format).

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