My lab is investigating the mechanisms by which photosynthetic
organisms sense and respond to environmental change, using
cyanobacterial RNA helicases as our model system. Expression of two
distinct RNA helicases, CrhC and CrhR, whose expression is regulated by environmental
stresses including light and temperature that induce alterations in the redox status of the
electron transport chain.
Since RNA helicases unwind dsRNA (inactive) to produce ssRNA that is
functional, they have the potential to regulate gene expression, thereby
linking environmentally induced changes in gene transcription with
control at the post-transcriptional level. The research involves an
integrated approach using molecular, biochemical, genetic and
Our current research focuses on four primary issues:
Project 1. Environmental change and regulation of gene expression. We
are interested in determining the players involved in sensing, signal
transduction and expression of crhR in response to environmental conditions that alter the redox status of the electron transport chain. We are utilizing our knowledge of environmental gene regulation to control expression of proteins required for biotechnological purposes, for example biofuel production.
Project 2. Omics analysis of RNA helicase interacting partners. We
are attempting to identify RNA and protein cofactors interacting with
the RNA helicases using co-IP/affinity purification combined with RNA
sequencing and mass spectrometric techniques. This analysis will allow insights
into the physiological role performed by RNA helicases.
Project 3. Biochemistry of RNA helicase alteration of RNA secondary
structure. CrhC and CrhR alter different RNA secondary structures. We
are interested in determining how the helicases interact with specific
RNAs and the mechanism by which the secondary structure alteration is
Project 4. In conjunction with the Konhauser lab (EAS, UofA) we are interested in growing cyanobacteria under conditions
that existed on the early earth, studying the ability to grow under these adverse conditions and also elucidating how cyanobacteria contributed to changing the earths environment. For example participation in the Great Oxidation Event (GOE) and the precipitation of minerals from the oceans.