Toshifumi Yokota

University of Alberta Distinguished Professor

8-29A Medical Sciences Building
Office: 780.492.1102
Email: toshifum@ualberta.ca
Yokota Lab Website

 

Toshifumi (Toshi) Yokota, PhD, FCAHS, serves as University of Alberta Distinguished Professor in the Department of Medical Genetics and holds the Friends of Garrett Cumming Research & Muscular Dystrophy Canada Endowed Research Chair.

After earning a PhD in Cell Biology from the University of Tokyo, Dr. Yokota completed research fellowships at Imperial College London and the Children’s National Medical Center in Washington, D.C., before joining the University of Alberta. The research program is internationally recognized for groundbreaking contributions to RNA-based therapeutics and precision medicine for neuromuscular diseases.

Dr. Yokota pioneered the development of antisense oligonucleotide (ASO) therapies capable of restoring gene function and muscle strength in severe animal models of Duchenne muscular dystrophy (DMD). This foundational work directly led to the creation and FDA approval of viltolarsen in 2020—the first exon-skipping drug demonstrated to restore dystrophin and improve muscle function in clinical trials conducted across Canada, Japan, and the United States.

Building on this success, the lab has developed gapmer antisense approaches for facioscapulohumeral muscular dystrophy (FSHD), achieving over 99% suppression of the toxic DUX4 gene in patient-derived cells and animal models. The team continues to expand therapeutic innovations across a spectrum of rare diseases.

Dr. Yokota is a Fellow of the Canadian Academy of Health Sciences (FCAHS) and recipient of numerous awards, including the BioAlberta Scientific Achievement & Innovation Award, the NIH Ruth L. Kirschstein NRSA, and the JSPS Young Scholar Award.

According to ScholarGPS (2024–25), Dr. Yokota ranks:

#1 in the world for research impact in Muscular Dystrophy (top 0.01%)

#3 in the world for Oligonucleotide Research (top 0.02%)

#3 in the world for Personalized Medicine (top 0.02%)

With more than 100 peer-reviewed publications and four edited books, Dr. Yokota also serves on editorial boards for Genes, Cells, Nucleic Acid Therapeutics, Frontiers in Genome Editing, and Frontiers in Physiology. Through an active global network of academic and clinical collaborations, the Yokota Lab continues to advance RNA- and DNA-based therapeutics to improve the lives of individuals affected by genetic disease.

Selected Publications:

Representative original research publications of Dr. Yokota with trainees since 2017 include:
  1. Shah MNA et al (2025) DG9-PMO Boosts Nuclear Localization and DMD Exon 44 Skipping, Enhancing Muscle Function and Cardioprotection. Nat Commun. 16(1):4477.(IF=14.7)
     
  2. Irigoien E et al (2025) AOC 1044 Induces Exon 44 Skipping and Restores Dystrophin Protein in Preclinical Models of Duchenne Muscular Dystrophy. Nucleic Acids Res. 53(6):gkaf241. (IF=19.16)

  3. Anwar S et al (2025) Antisense oligonucleotide-mediated exon 27 skipping restores dysferlin function in dysferlinopathy patient-derived muscle cells. Mol Ther Nucleic Acids. 36(1):102443.(IF=10.20)
     
  4. Aslesh et al (2023) DG9 peptide-conjugated morpholino rescues phenotype in SMA model mice by reaching the CNS through a single subcutaneous administration. JCI Insight. e160516. (IF=9.484)
     
  5. Lim et al (2022) Development of DG9 peptide-conjugated single- and multi-exon skipping antisense oligonucleotides for the treatment of Duchenne muscular dystrophy. Proc. Natl. Acad. Sci. U.S.A.119 (9) e2112546119 (IF=12.78)
     
  6. Chiba et al (2021) eSkip-Finder: a machine learning-based web application and database to identify the optimal sequences of antisense oligonucleotides for exon skipping. Nucleic Acids Res. 49(W1): W193-W198. (IF=19.16)

  7. Lim et al (2021) DUX4 transcript knockdown with antisense 2’-O-methoxyethyl gapmers for the treatment of facioscapulohumeral muscular dystrophy. Mol Ther. 29: 848-58. (IF=12.90)
     
  8. Lim et al (2020) Inhibition of DUX4 expression with antisense LNA gapmers as a therapy for facioscapulohumeral muscular dystrophy. Proc. Natl. Acad. Sci. U.S.A. 117: 16509-16515.

  9. Echigoya et al (2019) Exons 45-55 skipping using mutation-tailored cocktails of antisense morpholinos in the DMD gene. Mol Ther. 27: 2005-2017.
     
  10. Lim et al (2019) Efficacy of multi-exon skipping treatment in Duchenne muscular dystrophy dog model neonates. Mol Ther. 27: 76-86.
     
  11. Lee et al (2018) Identification of novel antisense-mediated exon skipping targets in DYSF for therapeutic treatment of dysferlinopathy. Mol Ther Nucleic Acids.13: 596-604. (IF=10.20)
     
  12. Echigoya et al (2017) Effects of systemic multi-exon skipping with peptide-conjugated morpholinos in the heart of a dog model of Duchenne muscular dystrophy. Proc. Natl. Acad. Sci. U.S.A. 114: 4213-8.

  13. Echigoya et al (2017) Quantitative antisense screening and optimization for exon 51 skipping in Duchenne muscular dystrophy. Mol Ther. 25: 2561-2572.


Complete List of Published Work in My Bibliography

The Yokota Lab develops next-generation RNA- and genome-targeted therapies for rare neuromuscular and genetic diseases. The research program integrates molecular biology, bioinformatics, and translational medicine to advance precision therapeutics for conditions such as Duchenne and Becker muscular dystrophy (DMD/BMD), dysferlinopathy, facioscapulohumeral muscular dystrophy (FSHD), spinal muscular atrophy (SMA), fibrodysplasia ossificans progressiva (FOP), spinal and bulbar muscular atrophy (SBMA), and other severe neuromuscular disorders.

The group’s multidisciplinary work includes the development of antisense oligonucleotide (ASO) drugs, peptide–PMO conjugates (e.g., DG9-PMO), CRISPR-based genome editing, and personalized “n-of-1” RNA therapeutics designed for individual patients. Machine learning models are also employed to optimize ASO sequence design and delivery, accelerating therapeutic discovery through computational prediction and validation.

In addition to therapeutic development, the lab explores the role of aquaporins in muscle physiology, particularly aquaporin-4 (AQP4), a water channel that is markedly reduced in dystrophic muscle. Ongoing research aims to define the molecular mechanisms governing AQP4 recruitment to the sarcolemma and its impact on muscle function, providing new insights into the pathophysiology of muscular dystrophy and related disorders.

By combining fundamental research with translational application, the Yokota Lab is committed to improving the lives of individuals affected by genetic disease through innovation, collaboration, and precision medicine.

The Yokota Lab welcomes postdoctoral, graduate, and undergraduate trainees pursuing RNA-based and gene-editing therapies for neuromuscular diseases. Training includes antisense design, CRISPR editing, Disease modelling, and AI-driven prediction of therapeutic efficacy. Collaborative projects with international and industry partners offer broad translational exposure.

Dr. Rika Maruyama - Research Associate
Dr. Hidenori Moriyama - Postdoctoral Fellow
Man Yong - Lab Technician
Ahad Shah -Graduate Student
Harry Wilton-Clark - Graduate Student
Umme Sabrina Haque- Graduate Student
Jamie Leckie- Graduate Student
Sebastian Hernandez - Undergraduate Student
Zaraa Shaikh - Undergraduate Student
Sunny Wu - Undergraduate Student
Faiyza Akil Shaikh - Undergraduate Student
Laura Sutanto - Undergraduate Student
Joy Cao- Undergraduate Student 
Saeed Anwar (PhD 2025)
Farhia Haque, Ph.D. (2022–2024)
Tejal Aslesh (PhD 2023)
Kenji Lim (PhD 2021)
Joshua Lee (PhD 2018)
Aleksander Touznik (MSc 2016)
Ashley Guncay (MSc 2016)
Hosna Jabbari, Ph.D. (2015–2018)
Kana Hosoki, Ph.D. (2015–2017)
Yusuke Echigoya, D.V.M., Ph.D. (2012–2017)